If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 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'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ), 'gf_id' => 'HOM05D000863', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000863' ), 'data_identifier' => 'HOM05D000863', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000863', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '693', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16690' => 'bna', 'A01p29750' => 'bna', 'A02p12110' => 'bna', 'A03p03120' => 'bna', 'A03p56000' => 'bna', 'A03p68860' => 'bna', 'A06p28900' => 'bna', 'A08p06400' => 'bna', 'A09p16940' => 'bna', 'A10p09640' => 'bna', 'A10p28960' => 'bna', 'Aa31LG3G440' => 'aar', 'Aa31LG3G450' => 'aar', 'Aa31LG3G8250' => 'aar', 'Aa31sc904G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2980' => 'aag', 'Actinidia09573' => 'ach', 'Actinidia13539' => 'ach', 'Actinidia25055' => 'ach', 'Actinidia31445' => 'ach', 'Ah.04g158050' => 'amhyb', 'Ah.05g175710' => 'amhyb', 'AL1G52140' => 'aly', 'AL6G17420' => 'aly', 'AL7G27710' => 'aly', 'AL8G26100' => 'aly', 'AL8G38990' => 'aly', 'Aqoxy6G00288' => 'aox', 'Aqoxy7G00508' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22IVZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2861FR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.422KT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47A3W6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TCZ1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.822FWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5269G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BLJ7SD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5TJ0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C5YR29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8TDQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7AUT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYR572' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY6JSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M32WB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QV02Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF8D1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS21P9' => 'arhy', 'AT1G44090' => 'ath', 'AT1G60980' => 'ath', 'AT4G25420' => 'ath', 'AT5G07200' => 'ath', 'AT5G51810' => 'ath', 'ATR0081G011' => 'atr', 'ATR0661G405' => 'atr', 'Atru.chr13.1621' => 'acertr', 'Atru.chr4.964' => 'acertr', 'Atru.chr5.362' => 'acertr', 'Atru.chr5.363' => 'acertr', 'AUR62000497' => 'cqu', 'AUR62004269' => 'cqu', 'AUR62006843' => 'cqu', 'AUR62007685' => 'cqu', 'AUR62013454' => 'cqu', 'AUR62016064' => 'cqu', 'AUR62021271' => 'cqu', 'AUR62033388' => 'cqu', 'BcaB01g06031' => 'bca', 'BcaB02g09633' => 'bca', 'BcaB04g17608' => 'bca', 'BcaB04g17614' => 'bca', 'BcaB04g20299' => 'bca', 'BcaB04g20301' => 'bca', 'BcaB05g21629' => 'bca', 'BcaB05g23942' => 'bca', 'BcaB07g31256' => 'bca', 'BcaB08g35531' => 'bca', 'BcaC02g09039' => 'bca', 'BcaC02g10607' => 'bca', 'BcaC03g13181' => 'bca', 'BcaC03g14572' => 'bca', 'BcaC04g20633' => 'bca', 'BcaC06g31827' => 'bca', 'BcaC06g32463' => 'bca', 'BcaC07g37304' => 'bca', 'BcaC08g45300' => 'bca', 'BcaC09g49349' => 'bca', 'BcaC09g50778' => 'bca', 'BcaNung03692' => 'bca', 'BolC1t02022H' => 'bol', 'BolC1t03724H' => 'bol', 'BolC2t06263H' => 'bol', 'BolC2t08148H' => 'bol', 'BolC3t12895H' => 'bol', 'BolC3t18731H' => 'bol', 'BolC4t24241H' => 'bol', 'BolC4t25345H' => 'bol', 'BolC6t38068H' => 'bol', 'BolC7t45918H' => 'bol', 'BolC8t47583H' => 'bol', 'BolC9t54996H' => 'bol', 'BolC9t57002H' => 'bol', 'BolC9t59676H' => 'bol', 'BraA01t01622Z' => 'bra', 'BraA01t03102Z' => 'bra', 'BraA02t04908Z' => 'bra', 'BraA02t06274Z' => 'bra', 'BraA03t09670Z' => 'bra', 'BraA03t14671Z' => 'bra', 'BraA06t25837Z' => 'bra', 'BraA08t32650Z' => 'bra', 'BraA09t37331Z' => 'bra', 'BraA10t43045Z' => 'bra', 'BraA10t44944Z' => 'bra', 'C01p20950' => 'bna', 'C01p37570' => 'bna', 'C01p37580' => 'bna', 'C02p03010' => 'bna', 'C02p20200' => 'bna', 'C03p03520' => 'bna', 'C03p64710' => 'bna', 'C04p25700' => 'bna', 'C04p37690' => 'bna', 'C05p50950' => 'bna', 'C06p29050' => 'bna', 'C07p54330' => 'bna', 'C08p07390' => 'bna', 'C09p20980' => 'bna', 'C09p41260' => 'bna', 'C09p69320' => 'bna', 'CAN.G1187.3' => 'can', 'CAN.G1519.1' => 'can', 'CAN.G1561.6' => 'can', 'CAN.G1775.1' => 'can', 'CAN.G2217.1' => 'can', 'CAN.G28.11' => 'can', 'CAN.G28.12' => 'can', 'CAN.G4739.1' => 'can', 'CAN.G4739.2' => 'can', 'CAN.G572.60' => 'can', 'CAN.G681.60' => 'can', 'CAN.G681.61' => 'can', 'CAN.G681.62' => 'can', 'CAN.G710.22' => 'can', 'CANSAT01G0508' => 'cansat', 'CANSAT21G1224' => 'cansat', 'CANSAT21G1298' => 'cansat', 'CANSAT25G3650' => 'cansat', 'CANSAT56G4030' => 'cansat', 'CARHR035770' => 'chi', 'CARHR052030' => 'chi', 'CARHR205940' => 'chi', 'CARHR232830' => 'chi', 'CARHR264690' => 'chi', 'Carub.0001s3500' => 'cru', 'Carub.0006s0613' => 'cru', 'Carub.0007s1559' => 'cru', 'Carub.0008s1183' => 'cru', 'Carub.0008s2286' => 'cru', 'Ca_00079_v3' => 'car', 'Ca_05162_v3' => 'car', 'Ca_10070_v3' => 'car', 'Ca_10818_v3' => 'car', 'Ca_16621_v3' => 'car', 'Ca_16974_v3' => 'car', 'Ca_17626_v3' => 'car', 'Ca_21738_v3' => 'car', 'Cc00_g03550' => 'ccan', 'Cc00_g03560' => 'ccan', 'Cc00_g11460' => 'ccan', 'Cc00_g19630' => 'ccan', 'Cc02_g03620' => 'ccan', 'Cc03_g11570' => 'ccan', 'Cc03_g11880' => 'ccan', 'Cc03_g11890' => 'ccan', 'Cc03_g11900' => 'ccan', 'Cc03_g11920' => 'ccan', 'Cc03_g12140' => 'ccan', 'Cc07_g18840' => 'ccan', 'Cc09_g07540' => 'ccan', 'Cc10_g10320' => 'ccan', 'CDE04G1498' => 'cde', 'CDE06G2641' => 'cde', 'CDE08G1524' => 'cde', 'CDE12G0427' => 'cde', 'Cfa001820' => 'cfa', 'Cfa001824' => 'cfa', 'Cfa002921' => 'cfa', 'Cfa008254' => 'cfa', 'Ciclev10001771m.g' => 'ccl', 'Ciclev10003206m.g' => 'ccl', 'Ciclev10003260m.g' => 'ccl', 'Ciclev10003376m.g' => 'ccl', 'Ciclev10003385m.g' => 'ccl', 'Ciclev10005157m.g' => 'ccl', 'Ciclev10020694m.g' => 'ccl', 'CiPaw.01G258600' => 'cil', 'CiPaw.03G099700' => 'cil', 'CiPaw.03G119500' => 'cil', 'CiPaw.04G070300' => 'cil', 'CiPaw.04G080700' => 'cil', 'CiPaw.15G029400' => 'cil', 'CiPaw.16G020500' => 'cil', 'ClCG01G005290' => 'cla', 'ClCG01G015150' => 'cla', 'ClCG05G007660' => 'cla', 'ClCG06G000200' => 'cla', 'ClCG08G006170' => 'cla', 'COL.COLO4_06269' => 'col', 'COL.COLO4_12658' => 'col', 'COL.COLO4_14223' => 'col', 'COL.COLO4_14817' => 'col', 'COL.COLO4_19579' => 'col', 'COL.COLO4_19580' => 'col', 'COL.COLO4_19582' => 'col', 'COL.COLO4_19583' => 'col', 'COL.COLO4_19591' => 'col', 'COL.COLO4_35794' => 'col', 'Cpa.g.sc18.162' => 'cpa', 'Cpa.g.sc18.163' => 'cpa', 'Cpa.g.sc4.188' => 'cpa', 'Cpa.g.sc823.1' => 'cpa', 'CsaV3_3G016600' => 'csa', 'CsaV3_5G005560' => 'csa', 'CsaV3_6G005990' => 'csa', 'CsaV3_6G031260' => 'csa', 'CsaV3_6G041260' => 'csa', 'CSS0008107' => 'camsi', 'CSS0008117' => 'camsi', 'CSS0009475' => 'camsi', 'CSS0009584' => 'camsi', 'CSS0017409' => 'camsi', 'CSS0017452' => 'camsi', 'CSS0019461' => 'camsi', 'CSS0019623' => 'camsi', 'CSS0030336' => 'camsi', 'CSS0030656' => 'camsi', 'CSS0032351' => 'camsi', 'CSS0049712' => 'camsi', 'DCAR_006888' => 'dca', 'DCAR_009411' => 'dca', 'DCAR_010248' => 'dca', 'DCAR_015874' => 'dca', 'DCAR_018139' => 'dca', 'DCAR_023895' => 'dca', 'DCAR_027483' => 'dca', 'Dinv08127' => 'din', 'Dinv13175' => 'din', 'Dinv19527' => 'din', 'Dinv26524' => 'din', 'Dinv28510' => 'din', 'Dinv32404' => 'din', 'Dinv34362' => 'din', 'Dinv35134' => 'din', 'Duzib068G0622' => 'dzi', 'Duzib084G0214' => 'dzi', 'Duzib093G0526' => 'dzi', 'Duzib093G1025' => 'dzi', 'Duzib138G0188' => 'dzi', 'Duzib205G0812' => 'dzi', 'Duzib264G0590' => 'dzi', 'Duzib268G0112' => 'dzi', 'ECA232G3704' => 'eca', 'ECA233G3908' => 'eca', 'ECA234G1937' => 'eca', 'ECA236G1858' => 'eca', 'EL10Ac1g00944' => 'bvu', 'EL10Ac1g01386' => 'bvu', 'EL10Ac3g05748' => 'bvu', 'EL10Ac4g09601' => 'bvu', 'Eucgr.E01336' => 'egr', 'Eucgr.F02523' => 'egr', 'Eucgr.F02524' => 'egr', 'Eucgr.H05152' => 'egr', 'Eucgr.K00184' => 'egr', 'FAN01G0837' => 'fan', 'FAN01G2383' => 'fan', 'FAN01G2896' => 'fan', 'FAN03G0761' => 'fan', 'FAN03G1028' => 'fan', 'FAN03G1409' => 'fan', 'FAN03G3054' => 'fan', 'FAN06G0821' => 'fan', 'FAN06G1645' => 'fan', 'FAN06G2983' => 'fan', 'FAN06G3639' => 'fan', 'FAN06G4768' => 'fan', 'FAN06G4874' => 'fan', 'FAN10G0883' => 'fan', 'FAN10G1539' => 'fan', 'FAN10G3116' => 'fan', 'FAN10G3392' => 'fan', 'FAN10G3453' => 'fan', 'FAN20G3015' => 'fan', 'FAN27G0871' => 'fan', 'FvH4_2g35050' => 'fve', 'FvH4_7g12600' => 'fve', 'FvH4_7g12610' => 'fve', 'FvH4_7g28670' => 'fve', 'Glyma.03G019800' => 'gma', 'Glyma.04G211100' => 'gma', 'Glyma.04G244200' => 'gma', 'Glyma.06G119102' => 'gma', 'Glyma.06G155000' => 'gma', 'Glyma.07G081700' => 'gma', 'Glyma.09G149200' => 'gma', 'Glyma.10G241100' => 'gma', 'Glyma.13G035600' => 'gma', 'Glyma.14G157400' => 'gma', 'Glyma.16G200800' => 'gma', 'Glyma.20G153400' => 'gma', 'Gohir.A05G239400' => 'ghi', 'Gohir.A07G040300' => 'ghi', 'Gohir.A07G144800' => 'ghi', 'Gohir.A07G144900' => 'ghi', 'Gohir.A09G004600' => 'ghi', 'Gohir.A09G052000' => 'ghi', 'Gohir.A09G179200' => 'ghi', 'Gohir.A11G083350' => 'ghi', 'Gohir.D05G241000' => 'ghi', 'Gohir.D07G044400' => 'ghi', 'Gohir.D07G150800' => 'ghi', 'Gohir.D07G150900' => 'ghi', 'Gohir.D09G004100' => 'ghi', 'Gohir.D09G044300' => 'ghi', 'Gohir.D09G174550' => 'ghi', 'Gohir.D11G087480' => 'ghi', 'Gorai.001G047500' => 'gra', 'Gorai.001G172900' => 'gra', 'Gorai.001G173000' => 'gra', 'Gorai.006G005500' => 'gra', 'Gorai.006G051400' => 'gra', 'Gorai.006G196600' => 'gra', 'Gorai.007G093400' => 'gra', 'Gorai.009G250100' => 'gra', 'GSVIVG01008782001' => 'vvi', 'GSVIVG01018453001' => 'vvi', 'GSVIVG01026453001' => 'vvi', 'GSVIVG01026466001' => 'vvi', 'GSVIVG01027572001' => 'vvi', 'HanXRQChr04g0104211' => 'han', 'HanXRQChr04g0104221' => 'han', 'HanXRQChr04g0105101' => 'han', 'HanXRQChr04g0122111' => 'han', 'HanXRQChr07g0193431' => 'han', 'HanXRQChr14g0435781' => 'han', 'HanXRQChr15g0484571' => 'han', 'HanXRQChr15g0485291' => 'han', 'HanXRQChr15g0485301' => 'han', 'HanXRQChr15g0486241' => 'han', 'HanXRQChr16g0523501' => 'han', 'HanXRQChr17g0543281' => 'han', 'HanXRQChr17g0543291' => 'han', 'HanXRQChr17g0543301' => 'han', 'HanXRQChr17g0560681' => 'han', 'Haze_07970' => 'cav', 'Haze_13795' => 'cav', 'Haze_16717' => 'cav', 'Haze_17654' => 'cav', 'Haze_25284' => 'cav', 'Hma1.2p1_0197F.1_g085130' => 'hma', 'Hma1.2p1_0488F.1_g163900' => 'hma', 'Hma1.2p1_0532F.1_g173460' => 'hma', 'HPP92_001720' => 'vpl', 'HPP92_011930' => 'vpl', 'HPP92_011950' => 'vpl', 'HPP92_014574' => 'vpl', 'HPP92_014585' => 'vpl', 'HPP92_014956' => 'vpl', 'HPP92_028007' => 'vpl', 'Hund04677' => 'sun', 'Hund11784' => 'sun', 'Hund16977' => 'sun', 'Hund21818' => 'sun', 'Lalb_Chr03g0034161' => 'lal', 'Lalb_Chr04g0253611' => 'lal', 'Lalb_Chr04g0253621' => 'lal', 'Lalb_Chr06g0160851' => 'lal', 'Lalb_Chr08g0238211' => 'lal', 'Lalb_Chr10g0101451' => 'lal', 'Lalb_Chr11g0066241' => 'lal', 'Lalb_Chr11g0066251' => 'lal', 'Lalb_Chr12g0203071' => 'lal', 'Lalb_Chr12g0203081' => 'lal', 'Lalb_Chr13g0296651' => 'lal', 'Lalb_Chr13g0296671' => 'lal', 'Lalb_Chr17g0340101' => 'lal', 'Lalb_Chr17g0340131' => 'lal', 'Lj1A987T48' => 'lonja', 'Lj1g0000175' => 'lja', 'Lj1g0020126' => 'lja', 'Lj1g0020323' => 'lja', 'Lj2g0010713' => 'lja', 'Lj3g0013231' => 'lja', 'Lj4A834T41' => 'lonja', 'Lj5g0008604' => 'lja', 'Lj7A353G34' => 'lonja', 'Lj8A223G25' => 'lonja', 'Lj8C275T1' => 'lonja', 'Lj8C32T4' => 'lonja', 'Lj9A573G76' => 'lonja', 'Lsat_1_v5_gn_4_37400' => 'lsa', 'Lsat_1_v5_gn_7_6160' => 'lsa', 'Lsat_1_v5_gn_8_7780' => 'lsa', 'Lsat_1_v5_gn_9_53021' => 'lsa', 'Manes.01G264100' => 'mes', 'Manes.02G170100' => 'mes', 'Manes.05G042300' => 'mes', 'Manes.06G141200' => 'mes', 'Manes.11G065700' => 'mes', 'Manes.11G066000' => 'mes', 'Manes.12G096800' => 'mes', 'Manes.12G157700' => 'mes', 'Manes.13G085900' => 'mes', 'Manes.14G031200' => 'mes', 'Manes.18G084300' => 'mes', 'MBI03_g32365_MAGBIO' => 'mbi', 'MBI03_g39990_MAGBIO' => 'mbi', 'MBI04_g22917_MAGBIO' => 'mbi', 'MD00G1003600' => 'mdo', 'MD00G1123700' => 'mdo', 'MD01G1192100' => 'mdo', 'MD02G1198000' => 'mdo', 'MD06G1050300' => 'mdo', 'MD15G1088200' => 'mdo', 'Medtr1g081840' => 'mtr', 'Medtr1g102070' => 'mtr', 'Medtr3g088745' => 'mtr', 'Medtr3g096500' => 'mtr', 'Medtr6g464620' => 'mtr', 'Medtr8g033380' => 'mtr', 'Medtr8g093930' => 'mtr', 'Medtr8g093980' => 'mtr', 'Medtr8g094010' => 'mtr', 'MELO3C005397.2' => 'cme', 'MELO3C006857.2' => 'cme', 'MELO3C022518.2' => 'cme', 'MELO3C030020.2' => 'cme', 'MELO3C033125.2' => 'cme', 'Migut.C01290' => 'egut', 'Migut.F00399' => 'egut', 'Migut.F01163' => 'egut', 'Migut.H00683' => 'egut', 'Migut.L00253' => 'egut', 'Migut.L00664' => 'egut', 'Migut.N01412' => 'egut', 'MSTRG.1550' => 'ama', 'MSTRG.2640' => 'ama', 'MSTRG.27151' => 'ama', 'MSTRG.27488' => 'ama', 'MSTRG.28199' => 'ama', 'MSTRG.4880' => 'ama', 'MSTRG.8781' => 'ama', 'Nitab4.5_0000014g0190' => 'nta', 'Nitab4.5_0000014g0200' => 'nta', 'Nitab4.5_0000124g0040' => 'nta', 'Nitab4.5_0000205g0190' => 'nta', 'Nitab4.5_0000695g0130' => 'nta', 'Nitab4.5_0001341g0040' => 'nta', 'Nitab4.5_0001400g0040' => 'nta', 'Nitab4.5_0001573g0060' => 'nta', 'Nitab4.5_0002436g0110' => 'nta', 'Nitab4.5_0004690g0040' => 'nta', 'Nitab4.5_0006970g0020' => 'nta', 'Nitab4.5_0007374g0030' => 'nta', 'Nitab4.5_0008042g0010' => 'nta', 'Nitab4.5_0026405g0010' => 'nta', 'Nn1g01271' => 'nnu', 'Nn1g08930' => 'nnu', 'Nn3g17991' => 'nnu', 'Nn5g28481' => 'nnu', 'Nn6g34329' => 'nnu', 'Oeu024432.1' => 'oeu', 'Oeu024433.1' => 'oeu', 'Oeu030144.1' => 'oeu', 'Oeu033675.1' => 'oeu', 'Oeu037833.1' => 'oeu', 'Oeu039239.1' => 'oeu', 'Oeu058299.1' => 'oeu', 'Oeu059210.1' => 'oeu', 'Os01g0883800' => 'osa', 'Os03g0856700' => 'osa', 'Os05g0421900' => 'osa', 'Os07g0169700' => 'osa', 'Peaxi162Scf00132g00116' => 'pax', 'Peaxi162Scf00192g00611' => 'pax', 'Peaxi162Scf00988g00019' => 'pax', 'Peaxi162Scf01178g00015' => 'pax', 'PGR031G3413' => 'pgr', 'PGR042G2148' => 'pgr', 'PGR042G2835' => 'pgr', 'PGR102G2974' => 'pgr', 'PGR142G0354' => 'pgr', 'PGSC0003DMG400000011' => 'stu', 'PGSC0003DMG400014071' => 'stu', 'PGSC0003DMG400016537' => 'stu', 'PGSC0003DMG400024249' => 'stu', 'PGSC0003DMG400027963' => 'stu', 'PGSC0003DMG400036003' => 'stu', 'PGSC0003DMG400036075' => 'stu', 'PGSC0003DMG400038099' => 'stu', 'PGSC0003DMG400038209' => 'stu', 'PGSC0003DMG400038434' => 'stu', 'PGSC0003DMG400039274' => 'stu', 'PGSC0003DMG400039769' => 'stu', 'PGSC0003DMG400039968' => 'stu', 'PGSC0003DMG400039990' => 'stu', 'PGSC0003DMG400040776' => 'stu', 'PGSC0003DMG400041097' => 'stu', 'PGSC0003DMG400042158' => 'stu', 'PGSC0003DMG400042431' => 'stu', 'PGSC0003DMG400046498' => 'stu', 'PGSC0003DMG400046805' => 'stu', 'Phvul.001G066000' => 'pvu', 'Phvul.004G123600' => 'pvu', 'Phvul.007G064800' => 'pvu', 'Phvul.009G131500' => 'pvu', 'Phvul.009G155400' => 'pvu', 'Phvul.010G087500' => 'pvu', 'Potri.002G151300' => 'ptr', 'Potri.005G065400' => 'ptr', 'Potri.005G184200' => 'ptr', 'Potri.005G184400' => 'ptr', 'Potri.007G103800' => 'ptr', 'Potri.012G132400' => 'ptr', 'Potri.014G073700' => 'ptr', 'Potri.015G134600' => 'ptr', 'Prupe.1G442200' => 'ppe', 'Prupe.1G442300' => 'ppe', 'Prupe.1G535600' => 'ppe', 'Prupe.1G535900' => 'ppe', 'Prupe.2G150700' => 'ppe', 'Prupe.2G286800' => 'ppe', 'Psat0s1859g0040' => 'psa', 'Psat0s2303g0120' => 'psa', 'Psat0s2303g0160' => 'psa', 'Psat1g113960' => 'psa', 'Psat4g196360' => 'psa', 'Psat4g196400' => 'psa', 'Psat5g060880' => 'psa', 'Psat6g146720' => 'psa', 'Psat6g203160' => 'psa', 'Psat7g044680' => 'psa', 'Psat7g044720' => 'psa', 'PSO170G5016' => 'pso', 'PSO478G1950' => 'pso', 'PSO528G0163' => 'pso', 'PSO782G0113' => 'pso', 'QL08p051281' => 'qlo', 'QL09p030981' => 'qlo', 'QL10p042454' => 'qlo', 'RcHm_v2.0_Chr1g0351591' => 'rch', 'RcHm_v2.0_Chr1g0351601' => 'rch', 'RcHm_v2.0_Chr1g0351611' => 'rch', 'RcHm_v2.0_Chr1g0351621' => 'rch', 'RcHm_v2.0_Chr1g0351631' => 'rch', 'RcHm_v2.0_Chr1g0353771' => 'rch', 'RcHm_v2.0_Chr1g0353791' => 'rch', 'RcHm_v2.0_Chr1g0376161' => 'rch', 'RcHm_v2.0_Chr6g0306941' => 'rch', 'Rhsim03G0174300' => 'rsi', 'Rhsim07G0023400' => 'rsi', 'Sabra02G0119600' => 'sbr', 'Sabra05G0054200' => 'sbr', 'Sabra05G0140900' => 'sbr', 'Sabra05G0141000' => 'sbr', 'Sabra07G0085100' => 'sbr', 'Sabra12G0099700' => 'sbr', 'Sabra14G0052700' => 'sbr', 'Sabra15G0146700' => 'sbr', 'SalBow2G3593' => 'sbo', 'SalBow4G0709' => 'sbo', 'SalBow4G1051' => 'sbo', 'SalBow5G1825' => 'sbo', 'SalBow5G5344' => 'sbo', 'SalBow7G2737' => 'sbo', 'SalBow7G3397' => 'sbo', 'Sc07g0004020' => 'sci', 'Sc07g0004030' => 'sci', 'Sc09g0002330' => 'sci', 'Sc13g0008200' => 'sci', 'Sed0002190' => 'sed', 'Sed0007354' => 'sed', 'Sed0017823' => 'sed', 'Sed0018937' => 'sed', 'Sed0019038' => 'sed', 'Sed0023917' => 'sed', 'Sed0024002' => 'sed', 'SEGI_17903' => 'sgi', 'SEGI_28561' => 'sgi', 'SGA_v2.0_scaffold11G05613' => 'sas', 'SGA_v2.0_scaffold20G08992' => 'sas', 'SGA_v2.0_scaffold273G46460' => 'sas', 'SGA_v2.0_scaffold2G01096' => 'sas', 'SHI13832' => 'shi', 'SMO236G0077' => 'smo', 'Solyc01g093980.3' => 'sly', 'Solyc03g006880.3' => 'sly', 'Solyc06g035530.3' => 'sly', 'Solyc06g050110.2' => 'sly', 'Solyc09g009105.1' => 'sly', 'Solyc09g018410.3' => 'sly', 'Solyc09g018420.3' => 'sly', 'Solyc09g042210.1' => 'sly', 'Solyc10g045690.1' => 'sly', 'Solyc10g045770.3' => 'sly', 'Solyc10g046775.1' => 'sly', 'Solyc10g046800.3' => 'sly', 'Solyc10g046803.1' => 'sly', 'Solyc10g046807.1' => 'sly', 'Solyc10g046820.3' => 'sly', 'Solyc11g013353.1' => 'sly', 'Solyc11g013357.1' => 'sly', 'Solyc11g072310.2' => 'sly', 'Sopen01g037790' => 'spe', 'Sopen03g002880' => 'spe', 'Sopen06g011290' => 'spe', 'Sopen06g015500' => 'spe', 'Sopen09g003820' => 'spe', 'Sopen09g019760' => 'spe', 'Sopen11g008370' => 'spe', 'Sopen11g029980' => 'spe', 'Sp1g33360' => 'spa', 'Sp2g03560' => 'spa', 'Sp2g03590' => 'spa', 'Sp2g25360' => 'spa', 'Sp6g14060' => 'spa', 'Sp6g35690' => 'spa', 'Sp7g23440' => 'spa', 'TAR374G1234' => 'tar', 'TAR381G0605' => 'tar', 'TAR622G1441' => 'tar', 'TAR628G1299' => 'tar', 'TAR629G2575' => 'tar', 'THA.LOC104804476' => 'tha', 'THA.LOC104808423' => 'tha', 'THA.LOC104811498' => 'tha', 'THA.LOC104818267' => 'tha', 'THA.LOC104821190' => 'tha', 'THA.LOC104827542' => 'tha', 'THA.LOC104827543' => 'tha', 'THA.LOC104827544' => 'tha', 'Thecc.01G135700' => 'tca', 'Thecc.01G371700' => 'tca', 'Thecc.03G166300' => 'tca', 'Thecc.08G135800' => 'tca', 'Thhalv10012190m.g' => 'esa', 'Thhalv10013824m.g' => 'esa', 'Thhalv10015436m.g' => 'esa', 'Thhalv10023837m.g' => 'esa', 'Thhalv10025434m.g' => 'esa', 'TPR.G14675' => 'tpr', 'TPR.G1471' => 'tpr', 'TPR.G17405' => 'tpr', 'TPR.G2718' => 'tpr', 'TPR.G2763' => 'tpr', 'TPR.G2774' => 'tpr', 'TPR.G28193' => 'tpr', 'TPR.G35968' => 'tpr', 'TPR.G37320' => 'tpr', 'TPR.G37375' => 'tpr', 'TPR.G521' => 'tpr', 'TPR.G6344' => 'tpr', 'TPR.G6359' => 'tpr', 'TWI14G0825' => 'twi', 'TWI14G0975' => 'twi', 'TWI23G0039' => 'twi', 'TWI31G1471' => 'twi', 'TWI79G1488' => 'twi', 'unitig_0.g2775' => 'ugi', 'unitig_0.g467' => 'ugi', 'unitig_37.g12510' => 'ugi', 'unitig_37.g12511' => 'ugi', 'unitig_46.g18605' => 'ugi', 'unitig_46.g18776' => 'ugi', 'unitig_60.g25536' => 'ugi', 'unitig_747.g21805' => 'ugi', 'unitig_747.g21806' => 'ugi', 'unitig_748.g7093' => 'ugi', 'unitig_748.g7094' => 'ugi', 'unitig_8.g3392' => 'ugi', 'unitig_8.g3393' => 'ugi', 'vmacro06734' => 'vma', 'vmacro13359' => 'vma', 'vmacro13364' => 'vma', 'VMungo0331G0708' => 'vmu', 'VMungo0464G1102' => 'vmu', 'VMungo0647G0661' => 'vmu', 'VMungo0720G0748' => 'vmu', 'VMungo1309G0429' => 'vmu', 'VMungo1309G1599' => 'vmu', 'Zm00001eb064970' => 'zma', 'Zm00001eb145600' => 'zma', 'Zm00001eb366090' => 'zma' ) $gf_id = 'HOM05D000863' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000863' ) $data_identifier = 'HOM05D000863' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 14, 'bra' => (int) 11, 'can' => (int) 14, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 8, 'ccan' => (int) 14, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 11, 'mbi' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 20, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 9, 'rsi' => (int) 2, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 18, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 13, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366090' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1